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Cycles of biogenic elements

Thierry Moutin & Guillaume Le Gland (M1S2)

Objective

This unit provides the fundamental understanding of the physical and biogeochemical processes controlling the cycles of biogenic elements (N, P, Si), their quantification and the establishment of elemental balances from regional to global scales. The cycles of the major elements are presented, as well as the couplings between elements and between the major domains (atmosphere, continent, ocean) in a comparative approach between past evolutions (latest glacial/interglacial transitions) and current climate change.

Theoretical lectures : 40 h (2 teachears)

  1. The global oceanic nitrogen cycle: Different forms of reactive nitrogen and biogeochemical reactions, reservoirs and fluxes – ocean, continent, atmosphere-, anthropogenic perturbations, processes controlling the oceanic nitrogen cycle (deep nitrate reservoir and thermohaline circulation, biological control, the Dugdale & Goering model – new or regenerating production, exportable production, exported production), diazotrophy/nitrification/denitrification coupling on a global scale, coupling between the continental and oceanic cycles.
  2. The phosphorus cycle : Distribution and controlling factors of phosphate in marine environments (the role of phosphate in limiting oceanic production -, distribution, composition and availability of phosphate pools in the ocean, sources – rivers, atmosphere, volcanoes, hydrothermal processes – and sinks – burial of organic matter, adsorption on clays and iron oxohydroxides, phosphorite burial -, residence time), the biogeochemical cycle of phosphate (cycle in the World Ocean – Broecker & Peng’s 1st order model, cycle in the surface ocean – Thingstad model, climate change and Karl shift hypothesis -, coupling with the cycles of other biogenic elements (C, N, Si).
  3. The silicon cycle: The biogeochemical cycle of silicon (techniques for studying stocks and flows, dissolution of silica in the natural environment – reactivity of particulate silica and dissolution constants, effect of temperature, relationship with bacterial degradation processes, influence of aluminum content -). The global silicon cycle in the oceans – a textbook case in biogeochemical budgeting (production and dissolution of biogenic silica in the oceans – estimation of biogenic silica production and export, comparison of lower and upper limits -, biogeochemical balance of silicon in the World Ocean).
  4. Coupling the nitrogen and silicon cycles on a global scale: Isotopic fractionation of silicon and nitrogen (proxy for past climate change), silicon and the control of biogeochemistry on a global scale – coupling between thermocline nutrient salt contents in the Southern Ocean and low-latitude biological production, sub-Antarctic modal water (conservativity of the tracer Si* in SAMW , the conceptual model of Sarmiento et al. , 2003, the “Silicic Acid Leakage” hypothesis and the scenario of the last glacial-interglacial transition, implications in the context of global change), competition between species (optimal nutrient ratio, coexistence and dominance, competition in a variable environment, nutritional co-limitations).

► Tutorials : 20 h

TD-1. Nutrient availability, primary production and carbon export in the Mediterranean Sea

TD-2. Carbon fixation and mineral nitrogen assimilation in the equatorial Pacific Ocean

TD-3. Assimilation of mineral nitrogen and silicic acid by phytoplankton in the Southern Ocean

TD-4. Sulfur biogeochemical cycle and consequences for terrestrial climate dynamics

TD-5. The Broecker & Peng model (introducing a quantitative concept to the study of internal ocean cycles)

TD-6. The oceanic silicon cycle. Estimation of the main stocks and fluxes using the PANDORA model.

TD-7. The oceanic iron cycle, a control element for HNLC systems.

TD-8. Bibliography-1. Preparation of a synthesis paper on a current topic, presentation and discussion with students.

TD-9. Bibliography-2. Preparation of a summary paper on a current topic, presentation and discussion with students.

TD-10. Determination of “turn-over” times and direct and indirect estimates of dissolved inorganic phosphate concentrations in the surface ocean.

Traces elements and tracors

T. Moutin & T. Wagener (M1S2)

Objective

The aim of this lecture is to provide an in-depth understanding of ocean chemistry. Lectures cover the distribution of trace elements and radioactive isotopes to explain the workings of many oceanic processes. Lectures are complemented by the analysis and interpretation of trace element data obtained during an oceanographic operation in the coastal field.

Courtesy of Claudia Benitez-Nelson

Courtesy of Claudia Benitez-Nelson

Theoretical lectures : 18 h

1. Minor elements (sampling and measurement methods, distributions and chemical speciation, profile types, origin of inputs (continental, sedimentary, atmospheric, hydrothermal) and impacts on distributions, scavenging, biological interactions).

2. Geochemical equilibrium of elements and major ion composition. Introduction of a quantitative concept to the study of internal ocean cycles.

3. Radioactive isotopes (notions of radioactivity: radioactive decays, decay law, radioactive families and secular equilibrium), applications to the study of processes in the marine environment (measurement of particle scavenging velocity, dating of sediments and measurement of sedimentation velocity, determination of diffusion velocity).

4. Organic matter (OM) in the marine environment: nature, origin and fate of particulate and dissolved OM. OM: qualitative and quantitative aspects (main constituents of OM, general distribution of OM). Fate of particulate and dissolved OM: abiotic (condensation, auto-oxidation and photo-oxidation) and biotic processes of OM degradation. Sequestration processes of OM . Molecular and isotopic approaches (delta13C and delta14C) for characterizing OM at the chemical level.

Tutorial : 8 h

*Methods for sampling and measuring trace elements in the ocean: Critical studies of scientific articles.

*Introduction to methods for measuring and calculating chemical speciation in seawater (organic speciation and redox).

*Calculation of fluxes (continental, sedimentary, atmospheric, hydrothermal) and impacts on water column distributions.

Practical work : 4 h

Chemical analysis of samples collected during an oceanographic campaign. Analysis and interpretation of the results obtained.

Carbone cycle and climate

T. Moutin & H. Claustre, C. Lo Monaco, L. Bopp, I. Xueref-Rémi, D. Lefevre, F. Lemoigne, C. Tamburini (M2S1)

Objective

The aim of this lecture is to lay the foundations for the role of the marine carbon cycle in controlling climate on a global scale by regulating the partial pressure of atmospheric CO2. The course covers the carbon cycle in the surface ocean and water column, the calcium carbonate cycle, glacial and interglacial fluctuations in atmospheric CO2 during the Holocene, and anthropogenic CO2 perturbation (methods for tracing anthropogenic carbon in the ocean).

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Map showing annual mean air-sea CO2 partial pressure difference, based on data from Takahashi et al. 2002 (from Sarmiento & Gruber, 2006).

Lectures

1. The carbon cycle in the surface ocean: what factors control pCO2 in the surface ocean (dissolved mineral carbon chemistry – Revelle factor, mean annual distribution – physical and biological control processes, seasonal variability – subtropical gyres, North Atlantic, North Pacific), case study (deep-sea upwelling).

2. The carbon cycle in the water column (notion of pump, biological pumps, solubility or gas exchange pump, model results),

3. The calcium carbonate cycle (formation, processes in the water column – CaCO3 solubility, saturation state, carbonate distribution, dissolution in the water column -, impact of ocean acidification),

4. Anthropogenic CO2 perturbation (the greenhouse effect, glacial-interglacial fluctuations in atmospheric CO2 during the Holocene, global warming, evidence of anthropogenic perturbation). Thermodynamic and kinetic constraints on CO2 transfer between atmosphere and ocean. Penetration of anthropogenic CO2 into the ocean (direct estimates, methods for tracing anthropogenic carbon in the ocean – TROCA method, C* method, Chen and Millero method -, current and future ocean absorption capacity).

Other Interventions

Claire Lo Monaco (CNAP, LOCEAN Paris) previously N. Metzl (same laboratory, DR, Head of SOLAS-IMBER carbon group): “Evolution of oceanic CO2 in the South Indian Ocean (OISO campaigns)”

Hervé Claustre (DR CNRS Villefranche/mer, Chairman of the international Bio-Argo working group. Project leader: Remotely-sensed biogeochemical cycles in the Ocean): “Carbon balances at global, regional and local scales: contribution of sea color remote sensing and instrumented autonomous platforms”

Laurent Bopp (Department Director at ENS Paris): Modeling Marine Biogeochemistry. Applications to climate change

Frédéric Lemoigne (CR CNRS Brest) and Christian Tamburini (DR CNRS Marseille) : “Efficiency of the biological pump in the transfer of matter and carbon in the epi- and mesopelagic zone, Role of dissolved organic carbon in the oceanic carbon cycle”

Dominique Lefèvre (CR CNRS Marseille) : “Biological pump and dissolved oxygen dynamics”

Irène Xueref-Rémi (CNAP, Marseille) : “Assessment of CO2 stocks and fluxes in the atmosphere”

Chemical Oceanography

  1. Moutin, T. Wagener (M1S1)

Objective

Introduction to chemical oceanography. The aim of this course (balanced between lectures, tutorials and practical work) is to study the chemical composition of major elements in the oceans and the main processes explaining their distribution.

ImageDistributionP

► Theoretical courses : 24 h

  1. Descriptive chemical oceanography. Review of the main physical characteristics of the ocean, essential for explaining the composition and distribution of chemical elements in seawater. Use of chemical tracers in oceanography.
    2. Major components of seawater (Seawater, a complex medium, main constituents, salinity). Examples of variations in the relative composition of major elements. Origin and evolution of the chemical composition of seawater. 3. Distribution of dissolved gases in the ocean (inert and reactive gases). Dissolution and solubility. Gas exchange at the air/sea interface. Processes affecting conservative gases in seawater. Special case of biologically active gases. Comparative study of the distribution of a conservative gas and a reactive trace gas.
    4. The carbonate system (seawater pH, alkalinity, thermodynamic equilibrium of the system, measurable variables and quantities).
    5. Distribution of nutrients in the ocean and relationship to general circulation. Measurable forms and fractions of nitrogen, phosphate and silica in seawater. Use of nutrients as tracers of water masses.

Tutorials : 16 h

Notion of practical and absolute salinity (use of international oceanographic tables, equation of state for seawater, TEOS10), Dissolved oxygen (assays, expression of results, solubility, notion of AOU, study of profiles), Macronutrients (measurable fractions of nitrogen and phosphate, measurement methods, concentration and gradient calculations, notion of flux), Carbonate equilibrium (construction of log-log diagrams).

Practical work 20 h (booklet at bottom of page)

Determination of the main chemical components of seawater: dissolved oxygen, salinity, density, nutrient salts, chlorophyll a (biomass indicator), pH, alkalinity, calcium, dissolved and particulate organic nitrogen (biomass indicator).

References : Millero, F.J. 2006. Chemical Oceanography. 3rd ed. CRC press. ISBN 0-8493-2280-4. Copin-Montégut G. 1996. Chimie de l’Eau de Mer, Institut Océanographique de Paris, 319 pp. ISBN 2923581142 Sarmiento J.L. & N. Gruber. 2006. Ocean Biogeochemical Dynamics. Princeton University Press/ Princeton and Oxford. ISBN-13: 978-0-691-01707-5

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Practical work room at Endoume marine station